bioinfo

http://www.rcsb.org/pdb/explore/remediatedSequence.do?structureId=1F88

http://www.rcsb.org/pdb/results/results.do?tabtoshow=Current&qrid=E5AC53A&startAt=0&newsortfield=E%20Value

Red human opsin: https://www.ncbi.nlm.nih.gov/protein/NP_064445.2

Bovine rhodopsin: http://www.rcsb.org/pdb/explore.do?structureId=1f88

NCBI: http://www.ncbi.nlm.nih.gov/

Entrez: http://www.ncbi.nlm.nih.gov/sites/gquery

BLAST: http://blast.ncbi.nlm.nih.gov/Blast.cgi

Needleman-Wunsch global alignment (including gaps) and a Smith-Waterman local alignment:

http://www.ebi.ac.uk/emboss/align/

 

what is HGID? HGID is a “HomoloGeneID” – number assigned to a set of genes found in various organisms that are considered to be homologous.
1. From the main NCBI website select HomoloGene from the database dropdown menu.

MULTIPLE SEQUENCE ALIGNMENT:

perform multiple sequence alignments using programs available at the European Bioinformatics Institute (Clustal O, MAFFT, Muscle, and T-Coffee ). You can cut and paste them using the links below:
http://www.ebi.ac.uk/Tools/msa

-ClustalO is influenced by closely related proteins