Red human opsin: https://www.ncbi.nlm.nih.gov/protein/NP_064445.2
Bovine rhodopsin: http://www.rcsb.org/pdb/explore.do?structureId=1f88
Needleman-Wunsch global alignment (including gaps) and a Smith-Waterman local alignment:
what is HGID? HGID is a “HomoloGeneID” – number assigned to a set of genes found in various organisms that are considered to be homologous.
1. From the main NCBI website select HomoloGene from the database dropdown menu.
MULTIPLE SEQUENCE ALIGNMENT:
perform multiple sequence alignments using programs available at the European Bioinformatics Institute (Clustal O, MAFFT, Muscle, and T-Coffee ). You can cut and paste them using the links below:
-ClustalO is influenced by closely related proteins